***********************
install LibMultiScale
***********************

externals
*********

module list on grid5000
module list

get MPI path on grid5000
module show mvapich2/gcc/0.9.8-15
module show acml/gcc/64/3.6.0


install PATSC
-----------------
  PETSC_ARCH=linux-gnu-c-opt; export PETSC_ARCH
  PETSC_DIR=/home/bordeaux/maelafrit/opt/petsc/petsc-2.3.3-p15; export PETSC_DIR
  PETSC_DIR=/home/bordeaux/maelafrit/trunc/libmultiscale-externals/external/petsc-2.3.3-p15
./config/configure.py --with-cc=gcc --with-fc=gfortran  --with-debugging=no --with-shared=0 --with-mpi --with-x=0 --with-blas-lapack-dir=/cvos/shared/apps/acml/3.6.0/gfortran64 --with-mpi-dir=/cvos/shared/apps/ofed/mpi/gcc/mvapich2-0.9.8-15	

for bordereau
./config/configure.py --with-cc=gcc --with-fc=gfortran  --with-debugging=no --with-shared=0 --with-mpi --with-x=0 --with-mpi-dir=

/softs/mpich-1.2.7/bin/mpicc

install LibMesh
--------------------
cd external
patch libmesh
patch -N -p0 < ../patches/libmesh-0.5.0.patch
patching file libmesh-0.5.0/src/mesh/mesh_base.C
patching file libmesh-0.5.0/include/utils/parameters.h
patching file libmesh-0.5.0/src/fe/fe_map.C

cd libmesh-0.5.0
./configure --enable-mpi --disable-shared --disable-parmetis --disable-tecplot
make libmesh_CXXFLAGS+=-DMPICH_IGNORE_CXX_SEEK	for version 6
CXXFLAGS=-DMPICH_IGNORE_CXX_SEEK make				for version 5

unset INCLUDE


make libmultiscale 
********************

charger les modules suivants :
fftw2/gcc/64/double/2.1.5
scotch/current/int64


dans le CMakeCache.txt avec ccmake
 FFTW_INCLUDE_PATH                /cvos/shared/apps/fftw/gcc/64/2.1.5/double/include                                                                                                                                                  
 FFTW_LIBRARY                     /cvos/shared/apps/fftw/gcc/64/2.1.5/double/lib  


pour charger le module à chaque foi lors du demarrage
module initadd <nom du module>
ça va lui rajouter dans le .bashrc

compiler SIMULPACK qui est dans le repertoire FE-pkg


MPI config
***********


MPI

libmultiscale

 MPIEXEC                          /softs/mpich-1.2.7/bin/mpirun                                                                                            
 MPIEXEC_MAX_NUMPROCS             2                                                                                                                        
 MPIEXEC_NUMPROC_FLAG             -np                                                                                                                      
 MPIEXEC_POSTFLAGS                                                                                                                                         
 MPIEXEC_PREFLAGS                                                                                                                                          
 MPI_COMPILER                     /softs/mpich-1.2.7/bin/mpicxx                                                                                            
 MPI_COMPILE_FLAGS                -DUSE_STDARG -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDARG_H=1 -DUSE_STDARG=1 -DMALLOC_RET_VOID=1  
 MPI_EXTRA_LIBRARY                /home/bordeaux/jcastang/mpich/mpich-1.2.7/lib/libmpich.a;/usr/lib/libpthread.so;/usr/lib/librt.so                        
 MPI_INCLUDE_PATH                 /softs/mpich-1.2.7/include                                                                                               
 MPI_LIBRARY                      /home/bordeaux/jcastang/mpich/mpich-1.2.7/lib/libpmpich++.a


/softs/mpich-1.2.7/lib/libpmpich++.a
 

simulpack

 MPIEXEC                          /usr/bin/mpirun                                                                                                          
 MPIEXEC_MAX_NUMPROCS             2                                                                                                                        
 MPIEXEC_NUMPROC_FLAG             -np                                                                                                                      
 MPIEXEC_POSTFLAGS                                                                                                                                         
 MPIEXEC_PREFLAGS                                                                                                                                          
 MPI_COMPILER                     /usr/bin/mpicxx                                                                                                          
 MPI_COMPILE_FLAGS                -DUSE_STDARG -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDARG_H=1 -DUSE_STDARG=1 -DMALLOC_RET_VOID=1  
 MPI_EXTRA_LIBRARY                /usr/lib/libpthread.so;/usr/lib/librt.so                                                                                 
 MPI_INCLUDE_PATH                 /usr/lib/mpich/include                                                                                                   
 MPI_LIBRARY                      /usr/lib/libpmpich.so



 MPIEXEC                          /softs/mpich-1.2.7/bin/mpirun                                                                                            
 MPIEXEC_MAX_NUMPROCS             2                                                                                                                        
 MPIEXEC_NUMPROC_FLAG             -np                                                                                                                      
 MPIEXEC_POSTFLAGS                                                                                                                                         
 MPIEXEC_PREFLAGS                                                                                                                                          
 MPI_COMPILER                     /softs/mpich-1.2.7/bin/mpicxx                                                                                            
 MPI_COMPILE_FLAGS                -DUSE_STDARG -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDARG_H=1 -DUSE_STDARG=1 -DMALLOC_RET_VOID=1  
 MPI_EXTRA_LIBRARY                /softs/mpich-1.2.7/lib/libmpich.a;/usr/lib/libpthread.so;/usr/lib/librt.so                                               
 MPI_INCLUDE_PATH                 /softs/mpich-1.2.7/include                                                                                               
 MPI_LIBRARY                      /softs/mpich-1.2.7/lib/libpmpich++.a